Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs10059280 chr5:50612871 G/A 7.07E-5 176 25.28 24.62 31.35 KM Plot
PCPG rs10060580 chr5:105190600 A/G 4.06E-6 170 26.38 31.2 24.37 KM Plot
PCPG rs10062270 chr5:105190749 T/C 4.06E-6 170 26.38 31.2 24.37 KM Plot
PCPG rs10071749 chr5:50601535 T/C 7.47E-5 176 25.08 24.62 31.35 KM Plot
PCPG rs1007932 chr16:89838541 C/T 0.000154 174 25.87 23.37 36.37 KM Plot
PCPG rs10089963 chr8:126207277 T/C 0.000275 178 25.77 25.53 4.17 KM Plot
PCPG rs10093813 chr8:126217263 C/T 0.000275 178 25.77 25.53 4.17 KM Plot
PCPG rs10093819 chr8:126152375 A/G 0.000336 175 25.67 25.53 4.17 KM Plot
PCPG rs10095101 chr8:126235284 A/G 2.95E-5 178 25.35 28.3 4.17 KM Plot
PCPG rs10096522 chr8:126165278 G/A 3.56E-5 175 25.6 28.3 3.67 KM Plot
PCPG rs10097122 chr8:74271622 T/G 1.11E-16 172 25.28 26.57 3.17 KM Plot
PCPG rs10097568 chr8:126208921 T/C 0.000275 178 25.77 25.53 4.17 KM Plot
PCPG rs10098862 chr8:126206102 A/G 2.95E-5 178 25.35 28.3 4.17 KM Plot
PCPG rs10102769 chr8:126149315 A/G 3.22E-5 177 25.35 28.87 4.17 KM Plot
PCPG rs10106909 chr8:126228967 T/C 2.95E-5 178 25.35 28.3 4.17 KM Plot